IL_8PK0_054

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PK0_054 not in the Motif Atlas

Geometric match to IL_7A0S_003

Geometric discrepancy: 0.2616

The information below is about IL_7A0S_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

8PK0|1|A|U|2775
8PK0|1|A|A|2776
8PK0|1|A|U|2777
*
8PK0|1|A|A|2833
8PK0|1|A|A|2834

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial

Chain y

Transcription termination factor 4, mitochondrial