IL_8PKL_009

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2737

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8PKL|1|7|C|274
8PKL|1|7|C|275
8PKL|1|7|U|276
8PKL|1|7|G|277
8PKL|1|7|A|278
8PKL|1|7|A|279
8PKL|1|7|U|280
8PKL|1|7|C|281
*
8PKL|1|7|G|359
8PKL|1|7|U|360
8PKL|1|7|G|361
8PKL|1|7|A|362
8PKL|1|7|G|363

Current chains

Chain 7

23S ribosomal RNA

Nearby chains