IL_8PKL_012
3D structure
- PDB id
- 8PKL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 8PKL|1|7|A|504, 8PKL|1|7|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PKL_012 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.0615
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
8PKL|1|7|G|481
8PKL|1|7|A|482
8PKL|1|7|A|483
8PKL|1|7|C|484
*
8PKL|1|7|G|496
8PKL|1|7|A|497
8PKL|1|7|G|498
8PKL|1|7|U|499
8PKL|1|7|G|500
8PKL|1|7|A|501
8PKL|1|7|A|502
8PKL|1|7|A|503
8PKL|1|7|A|504
8PKL|1|7|A|505
8PKL|1|7|G|506
8PKL|1|7|A|507
8PKL|1|7|A|508
8PKL|1|7|C|509
Current chains
- Chain 7
- 23S ribosomal RNA
Nearby chains
- Chain p
- Nascent peptide
- Chain v
- 50S ribosomal protein L22
- Chain x
- 50S ribosomal protein L24
Coloring options: