IL_8PKL_035

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8PKL|1|7|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_035 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1414

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

8PKL|1|7|U|1018
8PKL|1|7|U|1019
8PKL|1|7|A|1020
8PKL|1|7|A|1021
8PKL|1|7|G|1022
8PKL|1|7|U|1023
8PKL|1|7|G|1024
*
8PKL|1|7|C|1140
8PKL|1|7|U|1141
8PKL|1|7|A|1142
8PKL|1|7|A|1143
8PKL|1|7|A|1144

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain m

50S ribosomal protein L13