IL_8PKL_050

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_050 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0757

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8PKL|1|7|C|1357
8PKL|1|7|G|1358
8PKL|1|7|A|1359
8PKL|1|7|G|1360
8PKL|1|7|G|1361
*
8PKL|1|7|C|1370
8PKL|1|7|G|1371
8PKL|1|7|U|1372
8PKL|1|7|A|1373
8PKL|1|7|G|1374

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain b

50S ribosomal protein L2

Chain l

50S ribosomal protein L34