IL_8PKL_090

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_090 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.1613

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8PKL|1|7|G|2396
8PKL|1|7|G|2397
8PKL|1|7|U|2398
*
8PKL|1|7|A|2418
8PKL|1|7|U|2419
8PKL|1|7|C|2420

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L35

Chain X

Transfer RNA; tRNA

Chain g

50S ribosomal protein L33

Chain o

50S ribosomal protein L15