IL_8PKL_097

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8PKL|1|7|G|2576, 8PKL|1|7|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_097 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.08

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

8PKL|1|7|C|2510
8PKL|1|7|U|2511
8PKL|1|7|C|2512
*
8PKL|1|7|G|2574
8PKL|1|7|C|2575
8PKL|1|7|G|2576
8PKL|1|7|A|2577
8PKL|1|7|G|2578

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain c

50S ribosomal protein L3

Chain p

Nascent peptide