IL_8PKL_187

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8PKL|1|7|U|846, 8PKL|1|7|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_187 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.4242

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8PKL|1|7|A|844
8PKL|1|7|A|845
8PKL|1|7|U|846
8PKL|1|7|U|847
8PKL|1|7|C|848
*
8PKL|1|7|G|930
8PKL|1|7|U|931
8PKL|1|7|U|932
8PKL|1|7|A|933
8PKL|1|7|U|934

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L30