IL_8PKL_188

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_188 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0723

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8PKL|1|7|G|1666
8PKL|1|7|G|1667
8PKL|1|7|A|1668
8PKL|1|7|A|1669
8PKL|1|7|C|1670
8PKL|1|7|U|1671
8PKL|1|7|A|1672
8PKL|1|7|G|1673
8PKL|1|7|G|1674
*
8PKL|1|7|C|1990
8PKL|1|7|U|1991
8PKL|1|7|G|1992
8PKL|1|7|U|1993
8PKL|1|7|C|1994

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain n

50S ribosomal protein L14