IL_8PKL_191

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUACC

Length

37 nucleotides

Bulged bases

8PKL|1|7|U|2131, 8PKL|1|7|U|2132, 8PKL|1|7|G|2133, 8PKL|1|7|C|2164, 8PKL|1|7|A|2171, 8PKL|1|7|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PKL|1|7|G|2123
8PKL|1|7|G|2124
8PKL|1|7|G|2125
8PKL|1|7|A|2126
8PKL|1|7|G|2127
8PKL|1|7|G|2128
8PKL|1|7|C|2129
8PKL|1|7|U|2130
8PKL|1|7|U|2131
8PKL|1|7|U|2132
8PKL|1|7|G|2133
8PKL|1|7|A|2134
8PKL|1|7|A|2135
8PKL|1|7|G|2136
8PKL|1|7|U|2137
*
8PKL|1|7|A|2154
8PKL|1|7|U|2155
8PKL|1|7|G|2156
8PKL|1|7|G|2157
8PKL|1|7|A|2158
8PKL|1|7|G|2159
8PKL|1|7|C|2160
8PKL|1|7|C|2161
8PKL|1|7|G|2162
8PKL|1|7|A|2163
8PKL|1|7|C|2164
8PKL|1|7|C|2165
8PKL|1|7|U|2166
8PKL|1|7|U|2167
8PKL|1|7|G|2168
8PKL|1|7|A|2169
8PKL|1|7|A|2170
8PKL|1|7|A|2171
8PKL|1|7|U|2172
8PKL|1|7|A|2173
8PKL|1|7|C|2174
8PKL|1|7|C|2175

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain X

Transfer RNA; tRNA

Chain a

Large ribosomal subunit protein uL1