IL_8PNN_051

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8PNN|1|1|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_051 not in the Motif Atlas

Homologous match to IL_8P9A_281

Geometric discrepancy: 0.167

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8PNN|1|1|G|1207
8PNN|1|1|U|1208
8PNN|1|1|G|1209
*
8PNN|1|1|C|1296
8PNN|1|1|C|1297

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 0

60S ribosomal protein L20-A

Chain 3

5S ribosomal RNA; 5S rRNA

Chain AN

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A