3D structure

PDB id
8PNN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Bromolissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UCUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
8PNN|1|1|A|1221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8PNN_052 not in the Motif Atlas
Homologous match to IL_8P9A_282
Geometric discrepancy: 0.2543
The information below is about IL_8P9A_282
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

8PNN|1|1|U|1218
8PNN|1|1|C|1219
8PNN|1|1|U|1220
8PNN|1|1|A|1221
8PNN|1|1|G|1222
8PNN|1|1|A|1223
8PNN|1|1|C|1224
8PNN|1|1|A|1225
8PNN|1|1|G|1226
*
8PNN|1|1|C|1283
8PNN|1|1|C|1284
8PNN|1|1|G|1285
8PNN|1|1|A|1286
8PNN|1|1|A|1287

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 0
60S ribosomal protein L20-A
Chain AN
Ubiquitin-60S ribosomal protein L40
Chain q
60S ribosomal protein L9-A

Coloring options:


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