IL_8PNN_089

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_089 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.0879

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8PNN|1|1|U|2211
8PNN|1|1|C|2212
8PNN|1|1|A|2213
8PNN|1|1|A|2214
8PNN|1|1|A|2215
8PNN|1|1|G|2216
8PNN|1|1|U|2217
*
8PNN|1|1|A|2228
8PNN|1|1|A|2229
8PNN|1|1|C|2230
8PNN|1|1|C|2231
8PNN|1|1|A|2232
8PNN|1|1|A|2233
8PNN|1|1|G|2234

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein L36-A

Chain AP

60S ribosomal protein L42-A