IL_8PNN_130

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_130 not in the Motif Atlas

Homologous match to IL_8CRE_135

Geometric discrepancy: 0.2331

The information below is about IL_8CRE_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8PNN|1|1|U|3300
8PNN|1|1|U|3301
8PNN|1|1|U|3302
8PNN|1|1|G|3303
*
8PNN|1|1|C|3311
8PNN|1|1|U|3312
8PNN|1|1|U|3313
8PNN|1|1|A|3314

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L31-A

Chain k

60S ribosomal protein L3

Chain x

60S ribosomal protein L17-A