IL_8PNN_136
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGCC*GUUGUU
- Length
- 10 nucleotides
- Bulged bases
- 8PNN|1|1|U|3354, 8PNN|1|1|U|3355
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_136 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.283
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8PNN|1|1|A|3347
8PNN|1|1|G|3348
8PNN|1|1|C|3349
8PNN|1|1|C|3350
*
8PNN|1|1|G|3353
8PNN|1|1|U|3354
8PNN|1|1|U|3355
8PNN|1|1|G|3356
8PNN|1|1|U|3357
8PNN|1|1|U|3358
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 5
- 60S ribosomal protein L22-A
- Chain J
- 40S ribosomal protein S8-A
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