IL_8PNN_141
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUCCC*GAUCA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_141 not in the Motif Atlas
- Homologous match to IL_8OI5_138
- Geometric discrepancy: 0.0812
- The information below is about IL_8OI5_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8PNN|1|3|U|32
8PNN|1|3|U|33
8PNN|1|3|C|34
8PNN|1|3|C|35
8PNN|1|3|C|36
*
8PNN|1|3|G|41
8PNN|1|3|A|42
8PNN|1|3|U|43
8PNN|1|3|C|44
8PNN|1|3|A|45
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- 60S ribosomal protein L5
- Chain s
- Large ribosomal subunit protein uL5B
Coloring options: