IL_8PNN_207

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_207 not in the Motif Atlas

Homologous match to IL_8P9A_436

Geometric discrepancy: 0.2263

The information below is about IL_8P9A_436

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14688.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8PNN|1|A|A|1234
8PNN|1|A|C|1235
8PNN|1|A|A|1236
*
8PNN|1|A|U|1249
8PNN|1|A|U|1250
8PNN|1|A|U|1251

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain e

Small ribosomal subunit protein uS14A

Chain g

Ubiquitin