IL_8PNN_226

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_226 not in the Motif Atlas

Homologous match to IL_8P9A_455

Geometric discrepancy: 0.1171

The information below is about IL_8P9A_455

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8PNN|1|A|C|1644
8PNN|1|A|G|1645
8PNN|1|A|C|1646
8PNN|1|A|U|1647
*
8PNN|1|A|A|1753
8PNN|1|A|A|1754
8PNN|1|A|A|1755
8PNN|1|A|A|1756
8PNN|1|A|G|1757

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AO

Large ribosomal subunit protein eL41B

Chain Y

40S ribosomal protein S23-A

Chain f

40S ribosomal protein S30-A