IL_8PNN_242

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_242 not in the Motif Atlas

Geometric match to IL_8P9A_292

Geometric discrepancy: 0.2194

The information below is about IL_8P9A_292

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8PNN|1|AR|C|163
8PNN|1|AR|A|164
8PNN|1|AR|A|165
8PNN|1|AR|C|166
*
8PNN|1|AR|G|256
8PNN|1|AR|U|257
8PNN|1|AR|G|258

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CN

60S ribosomal protein L13-A

Chain DJ

60S ribosomal protein L35-A