IL_8PNN_294

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

8PNN|1|AR|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_294 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.0638

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8PNN|1|AR|U|1501
8PNN|1|AR|C|1502
8PNN|1|AR|A|1503
8PNN|1|AR|A|1504
8PNN|1|AR|C|1505
*
8PNN|1|AR|G|1513
8PNN|1|AR|G|1514
8PNN|1|AR|A|1515

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L17-A

Chain CT

60S ribosomal protein L19-A

Chain DN

60S ribosomal protein L39