IL_8PNN_295
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8PNN|1|AR|A|1588, 8PNN|1|AR|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_295 not in the Motif Atlas
- Homologous match to IL_8P9A_291
- Geometric discrepancy: 0.0592
- The information below is about IL_8P9A_291
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8PNN|1|AR|C|1532
8PNN|1|AR|U|1533
8PNN|1|AR|A|1534
8PNN|1|AR|A|1535
8PNN|1|AR|G|1536
*
8PNN|1|AR|C|1585
8PNN|1|AR|G|1586
8PNN|1|AR|A|1587
8PNN|1|AR|A|1588
8PNN|1|AR|A|1589
8PNN|1|AR|G|1590
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CD
- 60S ribosomal protein L2-A
- Chain DI
- 60S ribosomal protein L34-A
- Chain DL
- 60S ribosomal protein L37-A
- Chain DN
- 60S ribosomal protein L39
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