IL_8PNN_309

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_309 not in the Motif Atlas

Geometric match to IL_8P9A_305

Geometric discrepancy: 0.037

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8PNN|1|AR|G|1898
8PNN|1|AR|G|1899
8PNN|1|AR|A|1900
8PNN|1|AR|A|1901
8PNN|1|AR|G|1902
8PNN|1|AR|U|1903
8PNN|1|AR|C|1904
8PNN|1|AR|G|1905
8PNN|1|AR|G|1906
*
8PNN|1|AR|C|2333
8PNN|1|AR|U|2334
8PNN|1|AR|G|2335
8PNN|1|AR|U|2336
8PNN|1|AR|C|2337

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CX

60S ribosomal protein L23-A