IL_8PNN_351

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

8PNN|1|AR|U|3078, 8PNN|1|AR|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_351 not in the Motif Atlas

Homologous match to IL_8P9A_347

Geometric discrepancy: 0.0584

The information below is about IL_8P9A_347

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|AR|C|3063
8PNN|1|AR|U|3064
*
8PNN|1|AR|A|3077
8PNN|1|AR|U|3078
8PNN|1|AR|U|3079
8PNN|1|AR|G|3080

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain DF

60S ribosomal protein L31-A