IL_8PNN_365

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_365 not in the Motif Atlas

Homologous match to IL_8CRE_139

Geometric discrepancy: 0.0733

The information below is about IL_8CRE_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8PNN|1|AR|U|3332
8PNN|1|AR|G|3333
8PNN|1|AR|U|3334
8PNN|1|AR|A|3335
8PNN|1|AR|A|3336
8PNN|1|AR|G|3337
*
8PNN|1|AR|C|3367
8PNN|1|AR|U|3368
8PNN|1|AR|G|3369
8PNN|1|AR|A|3370
8PNN|1|AR|G|3371

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CY

60S ribosomal protein L24-A

Chain DF

60S ribosomal protein L31-A