IL_8PNN_375
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGUG*CAU
- Length
- 7 nucleotides
- Bulged bases
- 8PNN|1|AS|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_375 not in the Motif Atlas
- Homologous match to IL_8P9A_370
- Geometric discrepancy: 0.0422
- The information below is about IL_8P9A_370
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
8PNN|1|AS|A|84
8PNN|1|AS|G|85
8PNN|1|AS|U|86
8PNN|1|AS|G|87
*
8PNN|1|AS|C|94
8PNN|1|AS|A|95
8PNN|1|AS|U|96
Current chains
- Chain AS
- 5S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CI
- 60S ribosomal protein L7-A
- Chain CL
- 60S ribosomal protein L10
- Chain CU
- 60S ribosomal protein L20-A
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