IL_8PNN_376
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 8PNN|1|AT|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_376 not in the Motif Atlas
- Homologous match to IL_8P9A_371
- Geometric discrepancy: 0.0668
- The information below is about IL_8P9A_371
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_76400.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
8PNN|1|AT|U|64
8PNN|1|AT|A|65
8PNN|1|AT|A|66
*
8PNN|1|AT|U|93
8PNN|1|AT|C|94
8PNN|1|AT|G|95
8PNN|1|AT|A|96
Current chains
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain DA
- 60S ribosomal protein L26-A
- Chain DJ
- 60S ribosomal protein L35-A
- Chain DL
- 60S ribosomal protein L37-A
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