IL_8PNN_395

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_395 not in the Motif Atlas

Homologous match to IL_8P9A_389

Geometric discrepancy: 0.0703

The information below is about IL_8P9A_389

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8PNN|1|sR|C|270
8PNN|1|sR|A|271
8PNN|1|sR|U|272
8PNN|1|sR|G|273
*
8PNN|1|sR|U|283
8PNN|1|sR|G|284
8PNN|1|sR|G|285

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CY

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A