IL_8PNN_410

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8PNN|1|sR|A|579, 8PNN|1|sR|U|581, 8PNN|1|sR|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_410 not in the Motif Atlas

Homologous match to IL_8P9A_404

Geometric discrepancy: 0.0524

The information below is about IL_8P9A_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8PNN|1|sR|G|562
8PNN|1|sR|U|563
8PNN|1|sR|G|564
8PNN|1|sR|C|565
8PNN|1|sR|C|566
8PNN|1|sR|A|567
8PNN|1|sR|G|568
*
8PNN|1|sR|C|575
8PNN|1|sR|G|576
8PNN|1|sR|G|577
8PNN|1|sR|U|578
8PNN|1|sR|A|579
8PNN|1|sR|A|580
8PNN|1|sR|U|581
8PNN|1|sR|U|582
8PNN|1|sR|C|583

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s3

Small ribosomal subunit protein uS3