IL_8PNN_411
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 8PNN|1|sR|A|619
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_411 not in the Motif Atlas
- Homologous match to IL_8P9A_405
- Geometric discrepancy: 0.0506
- The information below is about IL_8P9A_405
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20847.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
8PNN|1|sR|G|616
8PNN|1|sR|U|617
8PNN|1|sR|U|618
8PNN|1|sR|A|619
8PNN|1|sR|A|620
8PNN|1|sR|A|621
8PNN|1|sR|A|622
*
8PNN|1|sR|U|1104
8PNN|1|sR|C|1105
Current chains
- Chain sR
- 16S ribosomal RNA
Nearby chains
- Chain d3
- 40S ribosomal protein S23-A
- Chain d6
- Small ribosomal subunit protein eS26B
- Chain s2
- 40S ribosomal protein S2
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