IL_8PNN_419
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8PNN|1|sR|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_419 not in the Motif Atlas
- Homologous match to IL_8P9A_414
- Geometric discrepancy: 0.0731
- The information below is about IL_8P9A_414
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8PNN|1|sR|G|751
8PNN|1|sR|A|752
8PNN|1|sR|A|753
8PNN|1|sR|A|754
8PNN|1|sR|A|755
8PNN|1|sR|A|756
8PNN|1|sR|A|757
8PNN|1|sR|U|758
8PNN|1|sR|U|759
*
8PNN|1|sR|A|791
8PNN|1|sR|U|792
8PNN|1|sR|A|793
8PNN|1|sR|U|794
8PNN|1|sR|U|795
8PNN|1|sR|A|796
8PNN|1|sR|G|797
8PNN|1|sR|C|798
Current chains
- Chain sR
- 16S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain d2
- 40S ribosomal protein S22-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s9
- 40S ribosomal protein S9-A
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