IL_8PNN_431
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_431 not in the Motif Atlas
- Homologous match to IL_8P9A_426
- Geometric discrepancy: 0.0501
- The information below is about IL_8P9A_426
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8PNN|1|sR|G|1041
8PNN|1|sR|G|1042
8PNN|1|sR|A|1043
8PNN|1|sR|U|1044
*
8PNN|1|sR|G|1074
8PNN|1|sR|C|1075
8PNN|1|sR|A|1076
8PNN|1|sR|C|1077
Current chains
- Chain sR
- 16S ribosomal RNA
Nearby chains
- Chain c3
- 40S ribosomal protein S13
- Chain d6
- Small ribosomal subunit protein eS26B
- Chain s0
- 40S ribosomal protein S0-A
- Chain s1
- 40S ribosomal protein S1-A
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