IL_8PNN_436
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8PNN|1|sR|C|1158, 8PNN|1|sR|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_436 not in the Motif Atlas
- Homologous match to IL_8P9A_431
- Geometric discrepancy: 0.0648
- The information below is about IL_8P9A_431
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.11
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 19
Unit IDs
8PNN|1|sR|A|1157
8PNN|1|sR|C|1158
8PNN|1|sR|C|1159
8PNN|1|sR|A|1160
*
8PNN|1|sR|U|1617
8PNN|1|sR|C|1618
8PNN|1|sR|C|1619
8PNN|1|sR|C|1620
8PNN|1|sR|U|1621
Current chains
- Chain sR
- 16S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain d0
- Small ribosomal subunit protein uS10
- Chain d6
- Small ribosomal subunit protein eS26B
- Chain d8
- 40S ribosomal protein S28-A
- Chain s5
- 40S ribosomal protein S5
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