IL_8PNN_449

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

8PNN|1|sR|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_449 not in the Motif Atlas

Homologous match to IL_8P9A_444

Geometric discrepancy: 0.1141

The information below is about IL_8P9A_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8PNN|1|sR|C|1339
8PNN|1|sR|U|1340
8PNN|1|sR|A|1341
8PNN|1|sR|C|1342
*
8PNN|1|sR|G|1383
8PNN|1|sR|A|1384
8PNN|1|sR|G|1385

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain Rb

Guanine nucleotide-binding protein subunit beta-like protein

Chain c6

40S ribosomal protein S16-A

Chain c7

40S ribosomal protein S17-A

Chain d0

Small ribosomal subunit protein uS10