IL_8P9A_444

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

8P9A|1|sR|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8P9A|1|sR|C|1339
8P9A|1|sR|U|1340
8P9A|1|sR|A|1341
8P9A|1|sR|C|1342
*
8P9A|1|sR|G|1383
8P9A|1|sR|A|1384
8P9A|1|sR|G|1385

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain Rb

Guanine nucleotide-binding protein subunit beta-like protein

Chain c6

40S ribosomal protein S16-A

Chain c7

40S ribosomal protein S17-A

Chain d0

Small ribosomal subunit protein uS10