IL_8PNN_453
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_453 not in the Motif Atlas
- Homologous match to IL_8P9A_448
- Geometric discrepancy: 0.0587
- The information below is about IL_8P9A_448
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_91698.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PNN|1|sR|G|1480
8PNN|1|sR|C|1481
8PNN|1|sR|C|1482
8PNN|1|sR|A|1483
8PNN|1|sR|G|1484
8PNN|1|sR|C|1485
8PNN|1|sR|G|1486
8PNN|1|sR|A|1487
*
8PNN|1|sR|U|1519
8PNN|1|sR|U|1520
8PNN|1|sR|G|1521
8PNN|1|sR|U|1522
8PNN|1|sR|G|1523
8PNN|1|sR|A|1524
8PNN|1|sR|A|1525
8PNN|1|sR|A|1526
8PNN|1|sR|C|1527
Current chains
- Chain sR
- 16S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c9
- 40S ribosomal protein S19-A
- Chain d0
- Small ribosomal subunit protein uS10
- Chain d9
- Small ribosomal subunit protein uS14A
- Chain s3
- Small ribosomal subunit protein uS3
- Chain s5
- 40S ribosomal protein S5
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