IL_8PNN_460
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_460 not in the Motif Atlas
- Homologous match to IL_8P9A_455
- Geometric discrepancy: 0.054
- The information below is about IL_8P9A_455
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8PNN|1|sR|C|1644
8PNN|1|sR|G|1645
8PNN|1|sR|C|1646
8PNN|1|sR|U|1647
*
8PNN|1|sR|A|1753
8PNN|1|sR|A|1754
8PNN|1|sR|A|1755
8PNN|1|sR|A|1756
8PNN|1|sR|G|1757
Current chains
- Chain sR
- 16S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain DP
- Large ribosomal subunit protein eL41B
- Chain d3
- 40S ribosomal protein S23-A
- Chain e0
- 40S ribosomal protein S30-A
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