IL_8PNN_469

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_469 not in the Motif Atlas

Homologous match to IL_8P9A_464

Geometric discrepancy: 0.1164

The information below is about IL_8P9A_464

Detailed Annotation

Isolated tWW contact

Broad Annotation

Isolated tWW contact

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8PNN|1|sR|U|1688
8PNN|1|sR|A|1689
8PNN|1|sR|G|1690
*
8PNN|1|sR|C|1711
8PNN|1|sR|A|1712
8PNN|1|sR|G|1713

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CY

60S ribosomal protein L24-A