IL_8PPK_030

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

8PPK|1|2|G|600

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_030 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1007

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

8PPK|1|2|A|599
8PPK|1|2|G|600
8PPK|1|2|OMG|601
8PPK|1|2|G|602
8PPK|1|2|C|603
8PPK|1|2|A|604
8PPK|1|2|A|605
8PPK|1|2|G|606
*
8PPK|1|2|C|636
8PPK|1|2|U|637

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain J

40S ribosomal protein S9

Chain e

Small ribosomal subunit protein eS30

Chain j

Nsp1