IL_8PPK_059
3D structure
- PDB id
- 8PPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPK_059 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.1314
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8PPK|1|2|C|1098
8PPK|1|2|G|1099
8PPK|1|2|A|1100
8PPK|1|2|U|1101
*
8PPK|1|2|G|1131
8PPK|1|2|C|1132
8PPK|1|2|A|1133
8PPK|1|2|G|1134
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- 40S ribosomal protein SA
- Chain B
- 40S ribosomal protein S3a
- Chain N
- 40S ribosomal protein S13
- Chain R
- 40S ribosomal protein S17
- Chain a
- 40S ribosomal protein S26
Coloring options: