IL_8PPK_062

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGAGUA(PSU)G*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_062 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1809

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8PPK|1|2|G|1168
8PPK|1|2|G|1169
8PPK|1|2|A|1170
8PPK|1|2|G|1171
8PPK|1|2|U|1172
8PPK|1|2|A|1173
8PPK|1|2|PSU|1174
8PPK|1|2|G|1175
*
8PPK|1|2|U|1186
8PPK|1|2|G|1187
8PPK|1|2|A|1188
8PPK|1|2|A|1189
8PPK|1|2|A|1190
8PPK|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain h

60S ribosomal protein L41