IL_8PPK_081

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

8PPK|1|2|C|1403, 8PPK|1|2|U|1404

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_081 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.1049

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8PPK|1|2|A|1402
8PPK|1|2|C|1403
8PPK|1|2|U|1404
8PPK|1|2|A|1405
*
8PPK|1|2|U|1441
8PPK|1|2|OMU|1442
8PPK|1|2|C|1443
8PPK|1|2|U|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain Q

40S ribosomal protein S16

Chain U

40S ribosomal protein S20