IL_8PPK_090

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8PPK|1|2|C|1701, 8PPK|1|2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_090 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1056

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8PPK|1|2|C|1700
8PPK|1|2|C|1701
8PPK|1|2|G|1702
*
8PPK|1|2|C|1833
8PPK|1|2|A|1834
8PPK|1|2|A|1835
8PPK|1|2|G|1836

Current chains

Chain 2

18S rRNA

Nearby chains

Chain a

40S ribosomal protein S26

Chain j

Nsp1