IL_8PPK_093
3D structure
- PDB id
- 8PPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPK_093 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.5972
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73099.1
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PPK|1|2|C|1708
8PPK|1|2|G|1709
8PPK|1|2|C|1710
8PPK|1|2|U|1711
*
8PPK|1|2|A|1822
8PPK|1|2|A|1823
8PPK|1|2|A|1824
8PPK|1|2|A|1825
8PPK|1|2|G|1826
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain X
- 40S ribosomal protein S23
- Chain e
- Small ribosomal subunit protein eS30
- Chain h
- 60S ribosomal protein L41
- Chain j
- Nsp1
- Chain p
- Eukaryotic translation initiation factor 1
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