IL_8PPK_107

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

8PPK|1|2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_107 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1074

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8PPK|1|2|G|145
8PPK|1|2|G|146
8PPK|1|2|A|147
8PPK|1|2|U|148
8PPK|1|2|A|149
8PPK|1|2|A|150
8PPK|1|2|C|151
*
8PPK|1|2|G|167
8PPK|1|2|C|168
8PPK|1|2|U|169
8PPK|1|2|A|170
8PPK|1|2|A|171
8PPK|1|2|OMU|172
8PPK|1|2|A|173
8PPK|1|2|OMC|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24