IL_8PPK_113

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGAG*CGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_113 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2214

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8PPK|1|2|G|691
8PPK|1|2|G|692
8PPK|1|2|A|693
8PPK|1|2|G|694
*
8PPK|1|2|C|736
8PPK|1|2|G|737
8PPK|1|2|C|738
8PPK|1|2|C|739

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S7

Chain W

40S ribosomal protein S15a