IL_8PPK_123

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

8PPK|1|2|OMU|1326

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_123 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.115

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8PPK|1|2|G|1325
8PPK|1|2|OMU|1326
8PPK|1|2|G|1327
*
8PPK|1|2|C|1502
8PPK|1|2|C|1503

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain j

Nsp1