IL_8PPL_001

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AGCAU*A(PSU)A(PSU)U

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_001 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3977

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

8PPL|1|A2|A|22
8PPL|1|A2|G|23
8PPL|1|A2|C|24
8PPL|1|A2|A|25
8PPL|1|A2|U|26
*
8PPL|1|A2|A|648
8PPL|1|A2|PSU|649
8PPL|1|A2|A|650
8PPL|1|A2|PSU|651
8PPL|1|A2|U|652

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AJ

40S ribosomal protein S9

Chain AX

40S ribosomal protein S23