IL_8PPL_030
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- AG(OMG)GCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- 8PPL|1|A2|G|600
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_030 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.0837
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
8PPL|1|A2|A|599
8PPL|1|A2|G|600
8PPL|1|A2|OMG|601
8PPL|1|A2|G|602
8PPL|1|A2|C|603
8PPL|1|A2|A|604
8PPL|1|A2|A|605
8PPL|1|A2|G|606
*
8PPL|1|A2|C|636
8PPL|1|A2|U|637
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AC
- 40S ribosomal protein S2
- Chain AJ
- 40S ribosomal protein S9
- Chain Ae
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
- Chain Aj
- Host translation inhibitor nsp1
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