IL_8PPL_038
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- G(PSU)U*AAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_038 not in the Motif Atlas
- Geometric match to IL_2O3X_001
- Geometric discrepancy: 0.2161
- The information below is about IL_2O3X_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8PPL|1|A2|G|680
8PPL|1|A2|PSU|681
8PPL|1|A2|U|682
*
8PPL|1|A2|A|1023
8PPL|1|A2|A|1024
8PPL|1|A2|U|1025
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AL
- 40S ribosomal protein S11
- Chain AN
- 40S ribosomal protein S13
- Chain AW
- 40S ribosomal protein S15a
- Chain AX
- 40S ribosomal protein S23
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