IL_8PPL_053

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8PPL|1|A2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_053 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1512

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8PPL|1|A2|G|952
8PPL|1|A2|C|953
8PPL|1|A2|U|954
8PPL|1|A2|A|955
8PPL|1|A2|G|956
*
8PPL|1|A2|C|967
8PPL|1|A2|U|968
8PPL|1|A2|U|969
8PPL|1|A2|G|970
8PPL|1|A2|G|971
8PPL|1|A2|A|972
8PPL|1|A2|C|973
8PPL|1|A2|C|974

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AB

40S ribosomal protein S3a

Chain AO

40S ribosomal protein S14